Statistics

  • Alternative splicing counts of 5 types
    RefSeq Ensembl
    A3SS 5,665 7,768
    A5SS 3,637 4,713
    SE 14,569 20,103
    MXE 1,225 2,068
    RI 1,822 5,152
    Total 26,918 39,804
    RefSeq Ensembl
    AS gene 15,058 22,183
    Non-AS gene 12,720 35,590
    Total 27,778 57,773
    AS transcript 66,128 160,764
    Non-AS transcript 12,720 35,590
    Total 78,848 196,354

  • miRNA binding AS sites
    UCSC DB Prediction tool
    TargetScan microRna.org microT TargetScan
    Matched AS ID miRNA Matched AS ID miRNA Matched AS ID miRNA Matched AS ID miRNA
    2,329 7,055 1,529 1,308 2,329 7,055 348 140

  • Nonsense-mediated decay (NMD)
    Matched AS ID NMD
    stop codon cosmic dbsnp
    6,737 4,809 754 220

  • Repeat
    Interrupted Microsatellite RepeatMasker SegmentalDups SelfChain SimpleRepeats
    Matched AS ID repeat Matched AS ID repeat Matched AS ID repeat Matched AS ID repeat Matched AS ID repeat Matched AS ID repeat
    3,003 364 42 24 8,884 671 572 648 2,852 46 1,435 1

  • Mutation around alternative splicing site
    SPIDEX dbSNP COSMIC
    Matched AS ID variant Matched AS ID variant Matched AS ID variant
    50,121 394,241 22,917 18,336 24,874 21,547

  • Protein domain
    Matched AS ID Distinct protein domains
    24,475 3,713

  • Post-translational modification (PTM)
    Matched AS ID PTM feature
    Phosphorylation site Ubiquitination site Kinase Substrate Methylation site Sumoylation site Acetylation site Regulatory sites O-GalNAc site O-GlcNAc site
    10,088 16,174 3,088 80 414 437 1,416 474 286 35

  • Isoform-specific protein interaction
    Isoform-specific PPI Single gene PPI Single isoform PPI
    PPI-level count Ensembl 12,140 430 30,602
    RefSeq 13,226 458 30,461
    Gene-level count Ensembl 359 430 1,656
    RefSeq 390 458 1,588

  • Isoform-specific subcellular localization
    Total gene ID Subcellular localization
    2 3 4 >=5
    RefSeq 1,327 214 147 43 80
    Ensembl 1,105 235 97 40 24

  • RNA-binding proteins (RBP)
    Platform RBP Total sample Splicing factor (SF) SF sample
    eCLIP-Seq 112 322 33 102
    iCLIP-Seq 5 10 3 6
    RIP-Seq 23 93 5 25
    Total 135 425 38 133